getLabGenealogy {phyloTop} | R Documentation |
Create genealogy
Description
Create a labelled genealogy from an epidemiological record
Usage
getLabGenealogy(epirecord, epsilon = 0.001234)
Arguments
epirecord |
an epidemiological record, as output from the function |
epsilon |
an optional small number to be used for branch lengths which would otherwise be zero. |
Value
An object of class phylo
representing the transmission tree from infectors to infectees.
Author(s)
Caroline Colijn c.colijn@imperial.ac.uk
Michelle Kendall michelle.louise.kendall@gmail.com
See Also
Examples
## Generate an epidemiological record:
myepirecord <- makeEpiRecord(c(1,2,3,4))
## make the corresponding genealogy from this record:
mygenealogy <- getLabGenealogy(myepirecord)
plot(mygenealogy)
[Package phyloTop version 2.1.2 Index]