data_transform {pGRN} | R Documentation |
Pseudotime based Expression Data Transformation
Description
Based on single-cell pseudotime information, get the sliding window average expression, and then standard normlize the expression for each gene
Usage
data_transform(data, pseudotime, slide_window_size = 100, slide_step_size = 50)
Arguments
data |
expression matrix data |
pseudotime |
list of pseudotime |
slide_window_size |
sliding window size |
slide_step_size |
sliding window step size |
Value
Transformed new matrix
Examples
data <- matrix(1,100,1000)
ptime <- seq(1:1000)
data_transform(data,
ptime,
slide_window_size=100,
slide_step_size=50)
[Package pGRN version 0.3.5 Index]