| get.GOF.dictionary {nonmem2R} | R Documentation |
Get, set, and modify the global (or local) GOF parameters and GOF dictionary for labels
Description
The current global GOF parameters and dictionary is automatically applied to every plot you draw. Use 'get.GOF.params' to get the current GOF parameters, and 'set.GOF.params' to change one or several parameters. To change settings for one GOF only you can use GOF.control as input to the GOF function. See details below for complete list of GOF parameters.
Similarly use 'get.GOF.dictionary' and 'set.GOF.dictionary' for the dictionary of labels. 'set.GOF.dictionary' also allows for adding new items to the dictionary.
Use ‘set.ETA.labels' to set labels for ETA’s in all plots
Usage
get.GOF.dictionary()
set.GOF.dictionary(...)
default.GOF.dictionary()
set.GOF.params(...)
get.GOF.params()
default.GOF.params()
set.ETA.labels(labels)
set.script.name(script.name)
GOF.control(...)
Arguments
... |
named list of GOF parameter or GOF dictionary for labels |
labels |
vector of character strings with the labels |
script.name |
character strings for script name to put at end of caption |
Details
Table below describe each of the global GOF parameters that can be modified by 'set.GOF.params'
| Parameter | Default | Description |
| col.data | "gray20" | color for points in all GOFs |
| cex.data | 1.5 | cex for points in all GOFs |
| pch.data | 19 | pch for points in all GOFs |
| alpha.data | 0.5 | alpha for points in all GOFs |
| col.smooth | "#3366FF" | color for smoothers |
| lty.smooth | 1 | lty for smoothers |
| lwd.smooth | 1 | lwd for smoothers |
| se.smooth | TRUE | show confidence interval for loess smoother (TRUE) or not (FALSE) |
| span.smooth | 0.6666667 | span parameter for loess smothers |
| degree.smooth | 1 | degree parameter for loess smothers |
| family.smooth | "symmetric" | family parameter for loess smothers |
| col.refline | "red" | color for reference lines in all GOFs |
| lty.refline | 2 | lty for reference lines in all GOFs |
| lwd.refline | 1 | lwd for reference lines in all GOFs |
| fill.hist | "gray30" | color for filling of histograms |
| col.hist | "transparent" | color for border of histograms |
| alpha.hist | 0.5 | alpha for fill area in histograms |
| fill.box | "steelblue" | color for filling of box-plots |
| col.box | "black" | color for border and whisker of box-plots |
| alpha.box | 0.6 | alpha for fill area in box-plots |
| axis.labels | TRUE | use dictionary for labels (TRUE) or just use column names for axis labels (FALSE) |
| add.caption | TRUE | add caption to GOF plots (true) or not (FALSE) |
| size.caption | 8 | size for caption text |
| col.caption | 1 | color for caption text |
| caption.path.depth | 99 | number of folders levels to include in caption |
| corr.fontface | 4 | font face for correlation in eta.pairs.GOF |
| eta.labels | NULL | vector of labels for ETA's |
| script.name | "" | script name for caption |
Examples
### Example setting ETA labels
set.ETA.labels(c("Ka","CL","V"))
### Example setting script name
set.script.name("MyScript.R")