extToTable {nonmem2R} | R Documentation |
Compile parameter table suitable for reports
Description
Load parameter values from a nonmem .ext output file and compile to table suitable for reports. Format can be "wide" (wide=TRUE, default) with a similar look as from sumoR, or similar a 3 column layout (wide=FALSE).
Usage
extToTable(
model,
use.model.path = TRUE,
tableType = 2,
wide = TRUE,
format.estimate = "% -#6.4g",
format.rse = "%#6.3g"
)
Arguments
model |
name of the ext file with or without the .ext extension. model may include full or relative path to the ext file. See examples. |
use.model.path |
Load file from a global defined model library (TRUE=default).
If so will look for a global character vector named |
tableType |
Table type for THETA's, OMEGA's and SIGMA's tableType=0: Present OMEGA and SIGMA as variance and covariances and display SE for THETA, OMEGA, SIGMA tableType=1: Present OMEGA and SIGMA as variance and covariances and display RSE for THETA, OMEGA, SIGMA tableType=2: Present OMEGA and SIGMA as standard-deviation and correlations and display RSE for THETA, OMEGA, SIGMA tableType=3: Present OMEGA and SIGMA as standard-deviation and correlations and display SE for THETA, OMEGA, SIGMA |
wide |
produce a wide 9-column table (wide=TRUE, default) or a thin 3-column table(wide=FALSE) |
format.estimate |
format for estimated value, passed to sprintf |
format.rse |
format for rse, passed to sprintf |
Value
a character-matrix
Examples
##### Load the .ext file "run001.ext"
# 1) Get path to the example file included in nonmem2R package
file1 <- system.file("extdata", "run001.ext", package = "nonmem2R")
# 2) Load the file using the extload function
extToTable(file1)