AlleleFreq {mixIndependR} | R Documentation |
Calculate Allele Frequency
Description
Calculate Allele Frequency
Usage
AlleleFreq(x,sep)
Arguments
x |
a dataset of genotypes. Each row denotes each individual; each column contain each marker. |
sep |
the allele separator in the imported genotype data.Note: when using the special character like "|", remember to protect it as "\|"(default). |
Details
This function calculates the allele frequencies of one dataset.
Value
a matrix of allele frequencies. Each row denotes each allele; each column denotes each marker. The order of makers follows x.
Examples
require(mixIndependR)
x <- data.frame(STR1=c("12|12","13|14","13|13","14|15"),
SNP1=c("A|A","T|T","A|T","A|T"))
AlleleFreq(x,"\\|")
[Package mixIndependR version 1.0.0 Index]