Seq31 {localScore} | R Documentation |
Short protein sequence
Description
A short protein sequence of 31 amino acids corresponding to Q09FU3.fasta query in UniProt Data base.
Usage
Seq31
Format
A character string with 31 characters "MLTITSYFGFLLAALTITSVLFIGLNKIRLI"
Source
Examples
data(Seq31)
Seq31
nchar(Seq31)
data(HydroScore)
SeqScore=CharSequence2ScoreSequence(Seq31,HydroScore)
SeqScore
localScoreC(SeqScore)$localScore
LS=localScoreC(SeqScore)$localScore[1]
prob1 = scoreSequences2probabilityVector(list(SeqScore))
daudin(localScore = LS, sequence_length = nchar(Seq31),
score_probabilities = prob1,
sequence_min = min(SeqScore),
sequence_max = max(SeqScore))
score=-5:5
prob2=c(0.15,0.15,0.1,0.1,0.0,0.05,0.15,0.05,0.2,0.0,0.05)
sum(prob2*score)
karlin(localScore = LS, sequence_length = nchar(Seq31),
score_probabilities = prob2,
sequence_min = min(SeqScore),
sequence_max = max(SeqScore))
[Package localScore version 1.0.11 Index]