HydroScore {localScore}

Dictionnaire

Description

Provides integer scores related to an hydrophobicity level of each amino acid. This score function is inspired by the Kyte and Doolittle (1982) scale.

Usage

HydroScore

Format

A score function for the 20 amino acid

Source

Kyte & Doolittle (1982) J. Mol. Biol. 157, 105-132

Examples

data(HydroScore)
HydroScore
data(Seq219)
Seq219
seqScore=CharSequence2ScoreSequence(Seq219,HydroScore)
seqScore[1:30]
localScoreC(seqScore)$localScore