results {lfc}

Psi LFC effect size estimator for DESeq2

Description

Drop-in replacement for DESeq2's results function for simple settings involving a single variable. Appends the PsiLFC estimate.

Usage

results(object, contrast, cre = FALSE, ...)

Arguments

object

the DESeq2DataSet object

contrast

Vector of length 3, specifying the variable and the two levels to compute effect sizes for (<name>,<A>,<B>)

cre

Compute credible intervals as well? (can also be a vector of quantiles)

...

Handed over to DESeq2's results function

Value

Either a vector containing the estimates, or a data frame containing the credible interval as well