GWAS_data {hidecan} | R Documentation |
Creates a GWAS_data
object
Description
Creates a GWAS_data
object from a tibble or data-frame of GWAS results.
Usage
GWAS_data(dat, keep_rownames_as = NULL)
Arguments
dat |
Tibble, results from a GWAS analysis. See Details. |
keep_rownames_as |
Character, the name of the column in which to save the
rownames of the input data-frame. Default value is |
Details
The input data should have one row per marker, and at least the following columns:
-
chromosome
: character column, chromosome on which the marker is located. -
position
: numeric, the physical position of the marker along the chromosome (in bp). -
score
orpadj
: numeric, the GWAS score or adjusted p-value of the marker. If columnscore
column is missing, will be constructed as-log10(padj)
.
Value
A GWAS_data
object, i.e. a tibble.
Examples
x <- get_example_data()
GWAS_data(x[["GWAS"]])
[Package hidecan version 1.1.0 Index]