| kegg_abundance {ggpicrust2} | R Documentation |
KEGG Abundance Dataset
Description
A dataset derived from 'ko_abundance' by the function 'ko2kegg_abundance' in the ggpicrust2 package. Each row corresponds to a KEGG pathway, and each column corresponds to a sample.
Usage
kegg_abundance
Format
A data frame where rownames are KEGG pathways and column names are individual sample names, including: "SRR11393730", "SRR11393731", "SRR11393732", "SRR11393733", "SRR11393734", "SRR11393735", "SRR11393736", "SRR11393737", "SRR11393738", "SRR11393739", "SRR11393740", "SRR11393741", "SRR11393742", "SRR11393743", "SRR11393744", "SRR11393745", "SRR11393746", "SRR11393747", "SRR11393748", "SRR11393749", "SRR11393750", "SRR11393751", "SRR11393752", "SRR11393753", "SRR11393754", "SRR11393755", "SRR11393756", "SRR11393757", "SRR11393758", "SRR11393759", "SRR11393760", "SRR11393761", "SRR11393762", "SRR11393763", "SRR11393764", "SRR11393765", "SRR11393766", "SRR11393767", "SRR11393768", "SRR11393769", "SRR11393770", "SRR11393771", "SRR11393772", "SRR11393773", "SRR11393774", "SRR11393775", "SRR11393776", "SRR11393777", "SRR11393778", "SRR11393779"
Source
From ggpicrust2 package demonstration.
References
Douglas GM, Maffei VJ, Zaneveld J, Yurgel SN, Brown JR, Taylor CM, Huttenhower C, Langille MGI. PICRUSt2 for prediction of metagenome functions. Nat Biotechnol. 2020.