daa_results_df {ggpicrust2} | R Documentation |
DAA Results Dataset
Description
This dataset is the result of processing 'kegg_abundance' through the 'LinDA' method in the 'pathway_daa' function. It includes information about the feature, groups compared, p values, and method used.
Usage
daa_results_df
Format
A data frame with columns:
- adj_method
Method used for p-value adjustment.
- feature
The feature (pathway) being compared.
- group1
The first group in the comparison.
- group2
The second group in the comparison.
- method
The method used for the comparison.
- p_adjust
The adjusted p-value from the comparison.
- p_values
The raw p-value from the comparison.
Source
From ggpicrust2 package demonstration.
References
Douglas GM, Maffei VJ, Zaneveld J, Yurgel SN, Brown JR, Taylor CM, Huttenhower C, Langille MGI. PICRUSt2 for prediction of metagenome functions. Nat Biotechnol. 2020.
[Package ggpicrust2 version 1.7.3 Index]