eta_cov_plot {ggPMX}

Eta Covariates plots

Description

Eta Covariates plots

Relationships between (ETA) and categorical covariates

Relationships between (ETA) and continuous covariates

Usage

dummy(
  dname,
  show.correl,
  correl,
  point,
  facets,
  filter,
  strat.facet,
  strat.color,
  trans,
  pmxgpar,
  labels,
  axis.title,
  axis.text,
  ranges,
  is.smooth,
  smooth,
  is.band,
  band,
  is.draft,
  draft,
  is.identity_line,
  identity_line,
  scale_x_log10,
  scale_y_log10,
  color.scales
)

pmx_plot_eta_cats(ctr, ...)

pmx_plot_eta_conts(ctr, ...)

Arguments

dname

character name of dataset to be used

show.correl

logical if TRUE add correlation to the plot

correl

list correl geom text graphical parameter

point

list geom point graphical parameter

facets

list facetting graphical parameter

pmx_update parameters

filter

expression filter which will be applied to plotting data.

strat.facet

formula optional stratification parameter by facetting. This split plot by strats(each strat in a facet)

strat.color

character optional stratification parameter by grouping. This will split the plot by group (color) of strat.

trans

character define the transformation to apply on x or y or both variables

pmxgpar

a object of class pmx_gpar possibly the output of the

pmx_gpar: Shared basic graphics parameters

labels

list list containing plot and/or axis labels: title, subtitle, x , y

axis.title

list containing element_text attributes to customize the axis title. (similar to ggplot2 axis.title theme)

axis.text

list containing element_text attributes to customize the axis text (similar to ggplot2 axis.text theme)

ranges

list limits of x/y ranges

is.smooth

logical if set to TRUE add smooth layer

smooth

list geom_smooth graphical/smoothing fun parameters

is.band

logical if TRUE add horizontal band

band

list horizontal band parameters. geom_hline graphical parameters.

is.draft

logical if TRUE add draft layer

draft

list draft layer parameters. geom_text graphical parameters.

is.identity_line

logical if TRUE add an identity line

identity_line

listgeom_abline graphical parameters.

scale_x_log10

logical if TRUE use log10 scale for x axis.

scale_y_log10

logical if TRUE use log10 scale for y axis.

color.scales

list define scales parameter in case of strat.color pmx_settings

ctr

pmx controller

...

others graphics parameters passed :

• pmx_gpar internal function to customize shared graphical parameters

• eta_cov generic object for eta/covariates plots.

• pmx_update function.

eta_cov parameters

Value

ggplot2 object

Examples

# basic use  ---------------------------------------

ctr <- theophylline()
ctr %>% pmx_plot_eta_cats
ctr %>% pmx_plot_eta_conts

# update graphical parameter  ----------------------

## update labels
ctr %>% pmx_plot_eta_cats(
  labels = list(title = "New eta cats title")
)

## remove draft
ctr %>% pmx_plot_eta_cats(is.draft = FALSE)

## change text color line
ctr %>% pmx_plot_eta_conts(
  correl=list(colour="magenta")
  )

## set covariates custom labels 

ctr %>% pmx_plot_eta_conts(
  covariates=pmx_cov(values=list("WT0","AGE0"),
                     labels=list("Weight","Age"))
)

## set effects and covaraites custom labels


ctr <- theophylline( settings = pmx_settings(
  effects=list( levels=c("ka", "V", "Cl"), 
                labels=c("Concentration","Volume","Clearance")
  )
)
)
ctr %>% pmx_plot_eta_conts(
  covariates=pmx_cov(values=list("WT0","AGE0"),
                     labels=list("Weight","Age"))
)