chrY_subseg {genoPlotR}

Comparisons of subsegments of the Y chromosome in human and chimp

Description

A subsegment of the Y chromosome in Homo sapiens and Pan troglodytes, to illustrate support for exons and introns.

Usage

data(chrY_subseg)

Format

A list of two data frames, representing the Y segment in the two species, and containing:

• dna_segswhich is a list of two dna_seg objects, containing each three rows (or genes).

• comparisonwhich is a list of one comparison objects.

Details

Header for the Homo sapiens genbank file: LOCUS NC_000023 220001 bp DNA linear CON 10-JUN-2009 DEFINITION Homo sapiens chromosome X, GRCh37 primary reference assembly. ACCESSION NC_000023 REGION: 2600000..2820000 GPC_000000047

Header for the Pan troglodytes file: LOCUS NC_006491 220001 bp DNA linear CON 18-SEP-2006 DEFINITION Pan troglodytes chromosome X, reference assembly (based on Pan_troglodytes-2.1). ACCESSION NC_006491 REGION: 2620000..2840000

Examples

data(chrY_subseg)
plot_gene_map(chrY_subseg$dna_segs, chrY_subseg$comparison, dna_seg_scale=TRUE,
              scale=FALSE)