mauve_bbone {genoPlotR} | R Documentation |
Mauve backbone of 4 Bartonella genomes
Description
The result of a multiple genome alignment with Mauve.
Usage
data(mauve_bbone)
Format
bbone
, a list of two dataframes, representing the regions which
are conserved in at least two genomes:
dna_segs
which is a list of 4dna_seg
objects, containing the mauve blocks for each genome.comparisons
which is a list of 3comparison
objects.
A bash script to obtain the same file as in the data is
available in the extdata
folder of the package. Find its
location by running
system.file('extdata/mauve.sh', package = 'genoPlotR')
.
The resulting backone file can then be read with
read_mauve_backbone
.
References
Mauve: http://asap.ahabs.wisc.edu/mauve/
Examples
data(mauve_bbone)
plot_gene_map(bbone$dna_segs, bbone$comparisons)
[Package genoPlotR version 0.8.11 Index]