Contingency-test {genepop}

Exact test on a single contingency table

Description

Performs an exact conditional contingency-table test. There are many other ways of doing this in R but this function replicates the functionality of earlier genepop code analysing a contingency table provided in a file with ad hoc format. See this section of the Genepop executable documentation for more information on the statistical methods.

Usage

struc(
  inputFile,
  settingsFile = "",
  dememorization = 10000,
  batches = 100,
  iterations = 5000,
  verbose = interactive()
)

Arguments

inputFile

character: The path of the input file. This file should be in an ad hoc format

settingsFile

character: The path of the settings file

dememorization

integer: length of dememorization step of Markov chain algorithm

batches

integer: Number of batches

iterations

integer: Iterations per batch

verbose

logical: whether to print some information

Value

The path of the output file is returned invisibly.

Examples

locinfile <- genepopExample('structest.txt')
struc(locinfile)
if ( ! interactive()) clean_workdir(otherfiles='structest.txt')