genedivFis {genepop}

Gene diversities and Fis (or rho_IS)

Description

Evaluates Fis and gene diversities, or related measures based on allele sizes. See this section of the Genepop executable documentation for more information on the identity-based statistical methods, and this one for allele-size based ones.

Usage

genedivFis(
  inputFile,
  sizes = FALSE,
  outputFile = "",
  dataType = "Diploid",
  verbose = interactive()
)

Arguments

inputFile

The path of the input file, in Genepop format

sizes

logical: whether to compute statistics based on allele size, or not.

outputFile

character: The path of the output file

dataType

character: The haploid and diploid data

verbose

logical: whether to print some information

Value

The path of the output file is returned invisibly.

Examples

locinfile <- genepopExample('sample.txt')
genedivFis(locinfile,outputFile = 'sample.txt.DIV')
if ( ! interactive()) clean_workdir(otherfiles='sample.txt')