diat_sla {diathor}R Documentation

Calculates the Sladecek Index (SLA)

Description

The input for all of these functions is the resulting dataframe (resultLoad) obtained from the diat_loadData() function A CSV or dataframe cannot be used directly with these functions, they have to be loaded first with the diat_loadData() function so the acronyms and species' names are recognized References for the index:

Sample data in the examples is taken from:

Usage

diat_sla(resultLoad, maxDistTaxa = 2)

Arguments

resultLoad

The resulting list obtained from the diat_loadData() function

maxDistTaxa

Integer. Number of characters that can differ in the species' names when compared to the internal database's name in the heuristic search. Default = 2

Examples


# Example using sample data included in the package (sampleData):
data("diat_sampleData")
# First, the diat_loadData() function has to be called to read the data
# The data will be stored into a list (loadedData)
# And an output folder will be selected through a dialog box if resultsPath is empty
# In the example, a temporary directory will be used in resultsPath
df <- diat_loadData(diat_sampleData, resultsPath = tempdir())
slaResults <- diat_sla(df)


[Package diathor version 0.1.0 Index]