| diat_cemfgs_rb {diathor} | R Documentation |
Calculate the combined classification of ecological guilds and size classes for diatoms
Description
The input for these functions is the resulting dataframe obtained from the diat_loadData() function, to calculate the ecological guilds for the diatoms Sample data in the examples is taken from:
Nicolosi Gelis, María Mercedes; Cochero, Joaquín; Donadelli, Jorge; Gómez, Nora. 2020. "Exploring the use of nuclear alterations, motility and ecological guilds in epipelic diatoms as biomonitoring tools for water quality improvement in urban impacted lowland streams". Ecological Indicators, 110, 105951. https://doi:10.1016/j.ecolind.2019.105951
Classification is obtained from:
B-Béres, V., Török, P., Kókai, Z., Lukács, Á., Enikő, T., Tóthmérész, B., & Bácsi, I. (2017). Ecological background of diatom functional groups: Comparability of classification systems. Ecological Indicators, 82, 183-188.
Usage
diat_cemfgs_rb(resultLoad)
Arguments
resultLoad |
The resulting list obtained from the diat_loadData() function |
Examples
# Example using sample data included in the package (sampleData):
data("diat_sampleData")
# First, the diat_loadData() function has to be called to read the data
# The data will be stored into a list (loadedData)
# And an output folder will be selected through a dialog box if resultsPath is empty
# In the example, a temporary directory will be used in resultsPath
df <- diat_loadData(diat_sampleData, resultsPath = tempdir())
guildsResults <- diat_cemfgs_rb(df)