makeSubCoreList {crso}R Documentation

Get list of core rules from random subsets of samples

Description

Get list of core rules from random subsets of samples

Usage

makeSubCoreList(D, Q, rm, til, num.subsets, num.evaluated, shouldPrint)

Arguments

D

input matrix D

Q

input matrix Q

rm

binary rule matrix

til

list of top rule set index matrices

num.subsets

number of subset iterations, default is 100

num.evaluated

number of top rs considered per k per iteration, default is 1000

shouldPrint

Print progress updates? Default is TRUE

Examples

library(crso)
data(skcm)
list2env(skcm.list,envir=globalenv())
Q <- log10(P)
rm.full <- buildRuleLibrary(D,rule.thresh = 0.05) # Rule library matrix, dimension: 60 x 71
til.p2 <- makePhaseTwoImList(D,Q,rm.full,k.max = 3,
          pool.sizes=c(60,20,20),max.stored=100,shouldPrint = FALSE)
subcore.list <- makeSubCoreList(D,Q,rm.full,til.p2,num.subsets=3,num.evaluated=50)

[Package crso version 0.1.1 Index]