getCoreRS {crso}

Get core rules from phase 3 tpl and til

Description

Get core rules from phase 3 tpl and til

Usage

getCoreRS(D, rm, tpl, til, cov.thresh, perf.thresh)

Arguments

D

input matrix D

rm

binary rule matrix

tpl

list of top performances

til

list of top rule set index matrices

cov.thresh

core coverage threshold, defaults is 95

perf.thresh

core performance threshold, default is 90

Examples

library(crso)
data(skcm)
list2env(skcm.list,envir=globalenv())
Q <- log10(P)
rm.full <- buildRuleLibrary(D,rule.thresh = 0.05) # Rule library matrix, dimension: 60 x 71
til.p2 <- makePhaseTwoImList(D,Q,rm.full,k.max = 3,pool.sizes=c(60,20,20),
          max.stored=100,shouldPrint = FALSE)
tpl.p2 <- evaluateListOfIMs(D,Q,rm.full,til.p2)
core.rs <- getCoreRS(D,rm.full,tpl.p2,til.p2) # core.rs should be r1, r2, r3