weights.symcoca {cocorresp} | R Documentation |
Exctract CoCA model weights
Description
Extractor function to identify and select appropriate analysis weights from Co-correspondence Analysis models.
Usage
## S3 method for class 'symcoca'
weights(object, ...)
## S3 method for class 'predcoca'
weights(object, ...)
Arguments
object |
an object of class |
... |
arguments passed to other methods. Not used. |
Value
A numeric vector of common site weights is currently returned. These
correspond to R_{0}
in ter Braak and Schaffers (2004).
Author(s)
Gavin L. Simpson
References
ter Braak, C.J.F and Schaffers, A.P. (2004) Co-Correspondence Analysis: a new ordination method to relate two community compositions. Ecology 85(3), 834–846.
See Also
envfit.coca
uses these weights to estimate
weighted correlations in ordination space. See coca
for
details on creating CoCA models.
Examples
## symmetric CoCA
data(beetles)
data(plants)
## log transform the bettle data
beetles <- log(beetles + 1)
## fit the model
bp.sym <- coca(beetles ~ ., data = plants, method = "symmetric")
## weights == R[0]
weights(bp.sym)
[Package cocorresp version 0.4-4 Index]