R: Get CNA By Study

get_cna_by_study {cbioportalR}

R Documentation

Get CNA By Study

Get CNA By Study

get_cna_by_study(
  study_id = NULL,
  molecular_profile_id = NULL,
  add_hugo = TRUE,
  base_url = NULL
)

`study_id`	A study ID to query mutations. If NULL, guesses study ID based on molecular_profile_id.
`molecular_profile_id`	a molecular profile to query mutations. If NULL, guesses molecular_profile_id based on study ID.
`add_hugo`	Logical indicating whether `HugoGeneSymbol` should be added to your resulting data frame, if not already present in raw API results. Argument is `TRUE` by default. If `FALSE`, results will be returned as is (i.e. any existing Hugo Symbol columns in raw results will not be removed).
`base_url`	The database URL to query If `NULL` will default to URL set with `⁠set_cbioportal_db(<your_db>)⁠`

A dataframe of CNAs

## Not run: 
get_cna_by_study(study_id = "prad_msk_2019")
get_cna_by_study(molecular_profile_id = "prad_msk_2019_cna")

## End(Not run)

[Package cbioportalR version 1.1.0 Index]