baselineAlgorithms {baseline}

List of available baseline algorithms

Description

A list with descriptions of all baseline algorithms available through the optimisaiont framework and graphical user interface. The elements of the list are baselineAlg objects. The list is used by the code to extract names and information about the baseline algorithms.

Details

The list is not meant for usage by end-users, but is extendable and customizable, allowing for extra algorithms or removal of algoritms.

The names of the list must match the name slot of the elements.

Examples

## Get a list of all algorithms:
names(baselineAlgorithms)
## Show the descriptions
sapply(baselineAlgorithms, description)
## Add new algorithm
baseline.my.alg <- function(spectra, kappa=1, gamma=1){
   baseline  <- spectra-kappa+gamma
   corrected <- spectra-baseline
   list(baseline=baseline,corrected=corrected)
}

baselineAlgorithms$my.alg = new("baselineAlg",
     name = "my.alg",
     description = "A new baseline correction algorithm",
     funcName = "baseline.my.alg",
     param = data.frame(
        name = c("kappa","gamma"), # maxit
        integer = c(FALSE, FALSE),
        min = c(0, 0),
        incl.min = c(TRUE, TRUE),
        default = c(1, 1),
        max = c(Inf, 1),
        incl.max = c(FALSE, TRUE)
    ))