alignment_file {agvgd}

Pre-bundled alignments

Description

This function returns either a data frame of the pre-bundled alignments if parameter gene is missing (default behaviour), or the file name of the alignment of a supplied gene name.

Usage

alignment_file(gene)

Arguments

gene

The gene name of one of the pre-bundled alignments. Run alignment_file() to list all genes available.

Value

Either a data frame of the pre-bundled alignments if parameter gene is missing (default behaviour), or the file name of the alignment of a supplied gene name.

Examples

# List pre-bundled alignment file names and associated genes
alignment_file()

# Retrieve the file name of an alignment
alignment_file("BRCA1")

# You may get the full path to an alignment file with `system.file()`
system.file("extdata", alignment_file("BRCA1"), package = "agvgd")