poi_to_res {agvgd}

R Documentation

Convert an alignment position to residue position

Description

This function converts an alignment position to a position in the frame of the reference protein sequence, i.e., to the positions of the amino acids in the first sequence of the alignment.

Usage

poi_to_res(alignment, poi)

Arguments

alignment	An alignment.
poi	An alignment position.

Value

An integer vector of positions of the amino acid residues in the reference sequence.

Examples

align_ATM <- read_alignment('ATM')
align_ATM[, 1:5]

# Convert the positions of the first five alignment positions to residue positions
poi_to_res(align_ATM, 1:5)

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