Bean {ZeBook}

Bean gene-based models dataset

Description

Genetic data for the common bean (Phaseolus vulgaris L) that was based on a population created by C. E. Vallejos (personal communication; also see Bhakta et al., 2015, 2017) by crossing two widely-differing cultivars of bean (Calima, an Andean type, with Jamapa, a Mesoamerican type). Bean$marker : Bean Marker Data Bean$MET : Weather data on 5 Locations Bean$QTL : QTL Data Bean$modelpar : Dynamic Model parameters

Usage

Bean

Format

a List including 4 data.frame Bean$marker, Bean$MET, Bean$QTL, Bean$modelpar.

Source

C. E. Vallejos (personal communication) and Bhakta et al. (2015, 2017). Bhakta, M. S., V. A. Jones, C. E. Vallejos. 2015. Punctuated distribution of recombination hotspots and demarcation of pericentromeric regions in Phaseolus vulgaris L. PLoS ONE 10(1): https://doi.org/10.1371/journal.pone.0116822 Bhakta, M. S., S. A. Gezan, J. A. Clavijo Michelangeli, M. Carvalho, L. Zhang, J. W. Jones, K. J. Boote, M. J. Correll, J. Beaver, J. M. Osorno, R. Colbert, I. Rao, S. Beebe, A. Gonzalez, J. Ricaurte, and C. E.do Vallejos, 2017. A predictive model for time-to-flower in the common bean based on QTL and environmental variables. G3: Genes, Genomes, Genetics 7(12) 3901-3912. https://doi.org/10.1534/g3.117.300229.

Examples

# show the maker of JC1 to JC9 values for both parents (JAM and CAL)
# and 5 cRILS (RIJC001 to RIJC005)
Bean$marker[2:8,1:10]
# show the first value of weather data
head(Bean$MET)
# show the value of QTL
Bean$QTL[4:10,1:10]
# show the value of
Bean$modelpar