printGraphW {SubpathwayLNCE} | R Documentation |
Print the results of graph annotation and identification
Description
Print the results of graph annotation and identification.
Usage
printGraphW(ann,detail=FALSE)
Arguments
ann |
A list. The value was returned from the function |
detail |
A logical. If true, gene lists from the function |
Value
A data.frame. Columns include pathwayId, pathwayName, annMoleculeRatio, annBgRatio,annWeight, pvalue, 'fdr', annMoleculeList, annBgMoleculeList. Detailed information is provided in identifyLncGraphW
.
Author(s)
Xinrui Shi, Chunquan Li and Xia Li
See Also
Examples
## Not run:
### Integrate lncRNAs of competitive regulation into KEGG pathway graphs ###
LncGenePairs<-GetExampleData(exampleData="LncGenePairs")
inteUMGraph<-getInteUMGraph(LncGenePairs)
### get user-interested lncRNAs and genes sets.
geneLnc<-GetExampleData(exampleData="geneLnc")
# get locate subpathways.
sub<-getLocSubGraphLnc(geneLnc,inteUMGraph,type="gene_lncRNA",n=1,s=8)
SubcodeLncResult<-identifyLncGraphW(geneLnc,sub,type="gene_lncRNA",bet=1)
resultT<-printGraphW(SubcodeLncResult,detail=TRUE)
## End(Not run)
[Package SubpathwayLNCE version 1.0 Index]