Graphical network plot {SFSI}

Plotting a network

Description

Plot a Graphical Network obtained from a numeric matrix

Usage

## S3 method for class 'net'
plot(x, i = NULL, show.names = FALSE,
        group = NULL, group.shape = NULL,
        set.color = NULL, set.size = NULL,
        axis.labels = TRUE, curve = FALSE,
        bg.color = "white", unified = TRUE, ni = 36,
        line.color = "gray70", line.tick = 0.3,
        legend.pos = "right", point.color = "gray20",
        sets = c("Testing","Supporting","Non-active"),
        circle = FALSE, ...)

Arguments

x

An object of the 'net' class as per the net function

i

(integer vector) Index subjects in rows to be shown in plot. Default i=NULL will consider all elements in rows

show.names

TRUE or FALSE to whether show node names given by the row/column names of the matrix used to make the net (see help(net))

group

(data.frame) Column grouping for the subjects

group.shape

(integer vector) Shape of each level of the grouping column provided as group

bg.color

(character) Plot background color

line.color

(character) Color of lines connecting nodes in rows with those in columns

line.tick

(numeric) Tick of lines connecting nodes in rows with those in columns

curve

TRUE or FALSE to whether draw curve lines connecting nodes in rows with those in columns

set.color

(character vector) Color point of each type of node: row, 'active' column, and 'non-active' column, respectively

set.size

(numeric vector) Size of each type of node: row, 'active' column, and 'non-active' column, respectively

axis.labels

TRUE or FALSE to whether show labels in both axes

unified

TRUE or FALSE to whether show an unified plot or separated for each individual in 'testing'

point.color

(character) Color of the points in the plot

ni

(integer) Maximum number of row nodes that are plotted separated as indicated by unified=FALSE

legend.pos

(character) Either "right", topright","bottomleft","bottomright","topleft", or "none" indicating where the legend is positioned in the plot

sets

(character vector) Names of the types of node: row, 'active' column, and 'non-active' column, respectively

circle

TRUE or FALSE to whether draw a circle for each trait in a multi-trait 'SGP'

...

Other arguments for method plot: 'xlab', 'ylab', 'main'

Details

Plot a Graphical Network from a matrix where nodes are subjects in the rows and columns, and edges are obtained from the matrix entries. This Network is obtained using net function

Examples

  # See examples in
  # help(net, package="SFSI")