checks {RAMClustR}

checks

Description

check if MS data contains mz and rt, and if MSMS data is present feature names and sample names are identical

Usage

checks(
  ms1_featureDefinitions = NULL,
  ms1_featureValues = NULL,
  ms2_featureValues = NULL,
  feature_names = NULL
)

Arguments

ms1_featureDefinitions

dataframe with metadata with columns: mz, rt, feature names containing MS data

ms1_featureValues

dataframe with rownames = sample names, colnames = feature names containing MS data

ms2_featureValues

dataframe with rownames = sample names, colnames = feature names containing MSMS data

feature_names

feature names extracted from the data