write.methods {RAMClustR}

write.methods

Description

write RAMClustR processing methods and citations to text file

Usage

write.methods(ramclustObj = NULL, filename = NULL)

Arguments

ramclustObj

R object - the ramclustR object which was used to write the .mat or .msp files

filename

define filename/path to write. uses 'ramclustr_methods.txt' and the working directory by default.

Details

this function exports a file called ramclustr_methods.txt which contains the processing history, parameters used, and relevant citations.

Value

an annotated ramclustR object

nothing - new file written to working director

Author(s)

Corey Broeckling

References

Broeckling CD, Afsar FA, Neumann S, Ben-Hur A, Prenni JE. RAMClust: a novel feature clustering method enables spectral-matching-based annotation for metabolomics data. Anal Chem. 2014 Jul 15;86(14):6812-7. doi: 10.1021/ac501530d. Epub 2014 Jun 26. PubMed PMID: 24927477.