cdadata {MorphoTools2}

Class Cdadata

Description

The cdadata class is designed for storing results of canonical discriminant analysis.

Format

Class cdadata.

objects

ID

IDs of each row of scores object.

Population

population membership of each row of scores object.

Taxon

taxon membership of each row of scores object.

scores

ordination scores of cases (objects, OTUs).

eigenValues

eigenvalues, i.e., proportion of variation of the original dataset expressed by individual axes.

eigenvaluesAsPercent

eigenvalues as percent, percentage of their total sum.

cumulativePercentageOfEigenvalues

cumulative percentage of eigenvalues.

groupMeans

data.frame containing the means for the taxa.

rank

number of non-zero eigenvalues.

coeffs.raw

matrix containing the raw canonical coefficients.

coeffs.std

matrix containing the standardized canonical coefficients.

totalCanonicalStructure

matrix containing the total canonical structure coefficients, i.e., total-sample correlations between the original variables and the canonical variables.

canrsq

squared canonical correlations.