pcoadata {MorphoTools2}

Class pcoadata

Description

The pcoadata class is designed for storing results of principal coordinates analysis (PCoA).

Format

Class pcoadata.

objects

ID

IDs of each row of scores object.

Population

population membership of each row of scores object.

Taxon

taxon membership of each row of scores object.

scores

ordination scores of cases (objects, OTUs).

eigenValues

eigenvalues of principal coordinates.

eigenvaluesAsPercent

eigenvalues as percent, percentage of their total sum.

cumulativePercentageOfEigenvalues

cumulative percentage of eigenvalues.

groupMeans

data.frame containing the means for the taxa.

distMethod

used distance measure.

rank

number of possitive eigenvalues.