geneloc {MatrixEQTL} | R Documentation |
Artificial data for Matrix eQTL sample code: Gene location file.
Description
Artificial Gene location file for 10 genes.
geneid | chr | left | right |
Gene_01 | chr1 | 721289 | 731289 |
Gene_02 | chr1 | 752565 | 762565 |
... | ... | ... | ... |
Format
A data frame with 4 columns.
geneid
-
A column with gene names. The order does not have to match the gene expression data set.
chr
-
Chromosome number, i.e. chr1.
left
-
Lower (smaller) coordinate of the gene begining/end.
right
-
Upper (larger) coordinate of the gene begining/end.
Author(s)
Andrey A Shabalin andrey.shabalin@gmail.com
References
The package website: http://www.bios.unc.edu/research/genomic_software/Matrix_eQTL/
See Also
See Matrix_eQTL_engine
for reference and sample code.
[Package MatrixEQTL version 2.3 Index]