snpsloc {MatrixEQTL}

Artificial data for Matrix eQTL sample code: SNP location file.

Description

Artificial SNP location file for 15 markers.

snpid	chr	pos
Snp_01	chr1	721289
Snp_02	chr1	752565
...	...	...

Format

A data frame with 3 columns.

snpid

A column with SNP names. The order does not have to match the genotype data set.

chr

Chromosome number, i.e. chr1.

pos

Coordinate of the SNP.

Author(s)

Andrey A Shabalin [e-mail]

References

The package website: http://www.bios.unc.edu/research/genomic_software/Matrix_eQTL/

See Also

See Matrix_eQTL_engine for reference and sample code.