relabund {IgAScores} | R Documentation |
Relative Abundance from Counts
Description
This function converts values in a dataframe to a fraction/percentage of the sum of their column.
Usage
relabund(counttable, percentage = FALSE)
Arguments
counttable |
Data frame of numeric values with rows as observations and columns as samples. |
percentage |
Should values be returned as a percentage? i.e multiplied by 100. Default is FALSE (as required for most IgA scoring approaches). |
Value
A data frame of the input data normalised by column (to sum to either 1 or 100).
Examples
taxcounts <- data.frame(Sample1=c(1,2,10,10),Sample2=c(3,10,5,1))
rownames(taxcounts) <- c("Taxon1","Taxon2","Taxon3","Taxon4")
relabund(taxcounts)
[Package IgAScores version 0.1.2 Index]