genomemap {D3GB}

Create an interative genome map.

Description

genomemap creates an interactive genome map.

Usage

genomemap(assembly, mapTrack = NULL)

Arguments

assembly

a genome assembly data frame. D3GB provides human assemblies (NCBI36, GRCh37, GRCh38), human assemblies with cytobands (GRCh37.bands or GRCh38.bands), or methods for creating your own assembly from a FASTA file getAssemblyFromFasta.

mapTrack

a data frame with values to represent on the genome map in BED format: chromosome, start, end, name, value.

Value

Object of class genomebrowser.

Author(s)

David Barrios and Carlos Prieto. Bioinformatics, University of Salamanca. See http://d3gb.usal.es/

See Also

The ‘D3GB’ Website: http://d3gb.usal.es

createAssembly, getAssemblyFromFasta, GRCh37.bands, GRCh38.bands.

Examples

gm <- genomemap(GRCh38.bands)