gbk2genomebrowser {D3GB}

Generates an interactive genome browser.

Description

gbk2genomebrowser creates an interactive genome browser from a GenBank file.

Usage

gbk2genomebrowser(gbkfile)

Arguments

gbkfile

a "character" string representing the input GenBank file to be represented in the genome browser.

Value

Object of class genomebrowser.

Author(s)

David Barrios and Carlos Prieto. Bioinformatics, University of Salamanca. See http://d3gb.usal.es/

Examples

# Download GenBank file
gbff <- tempfile()
download.file(paste0("https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/297/395/",
"GCF_000297395.2_ASM29739v2/GCF_000297395.2_ASM29739v2_genomic.gbff.gz"),gbff)

# Genome browser generation.
gb <- gbk2genomebrowser(gbff)

plot(gb)