ampliconfreqs {AmpliconDuo} | R Documentation |

##
SSU Amplicon Frequencies Of Different Sampling Sites (Short Version)

### Description

A data frame with 16 amplicon data sets taken from 8 different sampling sites. A reduced version (frequencies of 2500 amplicons) of the `ampliconfreqs.long`

data provided with this package.
Samples from each sampling site were sequenced twice, corresponding to sets A and B (e.g. column FU25.A and FU25.B).
Names of the sampling sites are specified in the data `site.f`

.

### Usage

data(ampliconfreqs)

### Format

A data frame with 80903 observations on the following 16 variables.

`FU25.A`

a numeric vector

`FU25.B`

a numeric vector

`FU28.A`

a numeric vector

`FU28.B`

a numeric vector

`FU31.A`

a numeric vector

`FU31.B`

a numeric vector

`FU31.C`

a numeric vector

`FU31.D`

a numeric vector

`FU34.A`

a numeric vector

`FU34.B`

a numeric vector

`FU37.A`

a numeric vector

`FU37.B`

a numeric vector

`UniPond.A`

a numeric vector

`UniPond.B`

a numeric vector

`BogSoil.A`

a numeric vector

`BogSoil.B`

a numeric vector

### References

Boenigk J, Heider D, Jost S, Lange A, Budeus B, Schilling E,
Strittmatter A, Hoffmann D: A high-throughput amplicon sequencing and
analysis protocol for comparative analyses of microbial communities
*(submitted)*

### Examples

data(ampliconfreqs)
data(site.f)
ampliconduo.a <- ampliconduo(ampliconfreqs[,1:4], sample.names = site.f[1:2])

[Package

*AmpliconDuo* version 1.1.1

Index]