checkModTy {wrTopDownFrag}

Check & complete mixed of variable and fixed modifications

Description

Check & complete settings for mixed of variable and fixed modifications. The final format is a list with $basMod, $varMod and $varMo2

Usage

checkModTy(modTy, knownMods = NULL, silent = TRUE, callFrom = NULL)

Arguments

modTy

(character) list of modification types to be considered

knownMods

(character) optonal custom list of known modifications, default from AAfragSettings(outTy="all")$knownMods

silent

(logical) suppress messages

callFrom

(character) allow easier tracking of message(s) produced

Value

corrected list of mixed of variable and fixed modifications ($basMod, $varMod and $varMo2)

See Also

AAfragSettings

Examples

modTy1 <- list(basMod=c("b","y","h"),varMod=c("p","o","q"))
checkModTy(modTy1)