quantify_mean_width {vmeasur}

Quantify the vessel width over an entire ROI

Description

This function calculates the overall widths and contraction parameters for the vessel as a whole.

Usage

quantify_mean_width(widths_file, pixel_scale = 73)

Arguments

widths_file

A CSV file created by select_roi or threshold_vessel

pixel_scale

The number of pixels per mm, can be calculated with calibrate_pixel_size if unknown

Value

A list containing: A graph showing the detected contraction events, Details of each contraction event, The mean and standard deviation of the calculated contraction physiological parameters, The raw data used in the quantification process

Examples

quantify_mean_width(vmeasur::example_vessel)