genera_strippr {treestartr}

Check if tip is on tree

Description

Test which taxa in the total set of taxa are present on the tree, and which need to be added. The tax_frame object is assumed to be a dataframe, minimally with a column labeled "taxon". If this column does not exist, the first column in the dataframe will be assumed to contain the taxon information.

Usage

genera_strippr(tree, tax_frame)

Arguments

tree

Starting phylogeny, of type phylo

tax_frame

Total set of taxa on tree, as dataframe.

Value

absent_list of taxa that are present in the total set of trees, but not the starting tree

Examples

absent_taxa <- genera_strippr(tree, tax_frame = tax_frame)