| DengueTrees {treespace} | R Documentation |
BEAST analysis of Dengue fever
Description
These trees were created using one of the xml files provided with the original BEAST paper by Drummond and Rambaut (2007).
They provide an example of 17 dengue virus serotype 4 sequences from Lanciotti et al. (1997) (available as DengueSeqs) and xml files with varying priors for model and clock rate.
Here we include a random sample of 500 of the trees (from the second half of the posterior) produced using BEAST v1.8 with the standard GTR + Gamma + I substitution model with uncorrelated lognormal-distributed relaxed molecular clock (file 4).
Format
A multiPhylo object containing 500 trees, each with 17 tips
Author(s)
Michelle Kendall michelle.louise.kendall@gmail.com
Source
http://bmcevolbiol.biomedcentral.com/articles/10.1186/1471-2148-7-214
References
Drummond, A. J., and Rambaut, A. (2007) BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evolutionary Biology, 7(1), 214.
Lanciotti, R. S., Gubler, D. J., and Trent, D. W. (1997) Molecular evolution and phylogeny of dengue-4 viruses. Journal of General Virology, 78(9), 2279-2286.