parent.traits {treats} | R Documentation |
Get parent traits
Description
An internal utility function for modifiers
, traits
or events
to access the value(s) of the parent traits in the treats
algorithm
Usage
parent.traits(trait.values, lineage, current = TRUE)
Arguments
trait.values |
The internal table of trait values |
lineage |
The internal lineage data list |
current |
Whether to consider only the current lineage ( |
Details
This function is designed to be used internally in treats
to help modifiers
, traits
or events
objects to access the parent traits of the lineages simulated through the internal birth death algorithm.
Value
Returns one or more "numeric"
values.
Author(s)
Thomas Guillerme
See Also
Examples
## Speciation event is more likely if lineage's ancestor is further away from the mean trait value
distance.modify <- function(x, trait.values, lineage) {
## Distance to the parent's trait
parent_trait_val <- parent.traits(trait.values, lineage)[1]
mean_trait_val <- mean(trait.values[, 1])
distance <- abs(parent_trait_val - mean_trait_val)
## Scales x with the distance
return(x + x * distance)
}
## Make a distance modifier (speciation more likely with distance)
distance.speciation <- make.modifiers(speciation = speciation,
modify = distance.modify)
[Package treats version 1.0 Index]