calibrate {transreg}

Internal functions

Description

Internal functions called by transreg(), depending on choice between exponential and isotonic calibration.

Usage

.exp.multiple(
  y,
  X,
  prior,
  family,
  switch = FALSE,
  select = TRUE,
  track = FALSE
)

.iso.multiple(
  y,
  X,
  prior,
  family,
  switch = FALSE,
  select = TRUE,
  track = FALSE
)

.iso.fast.single(y, X, prior, family)

.iso.slow.single(y, X, prior, family)

Arguments

y

target: vector of length n (see family)

X

features: matrix with n rows (samples) and p columns (features)

prior

prior coefficients: matrix with p rows (features) and k columns (sources of co-data)

family

character "gaussian" (y: real numbers), "binomial" (y: 0s and 1s), or "poisson" (y: non-negative integers);

switch

choose between positive and negative weights for each source: logical

select

select from sources: logical

track

show intermediate output (messages and plots): logical

Functions

• .exp.multiple(): called by transreg if scale="exp"

• .iso.multiple(): called by transreg if scale="iso"

• .iso.fast.single(): called by transreg if scale="iso" (via .iso.multiple)

• .iso.slow.single(): replaced by .iso.fast.single

See Also

Use transreg() for model fitting.