treedata-class {tidytree}

Class "treedata" This class stores phylogenetic tree with associated data

Description

Class "treedata" This class stores phylogenetic tree with associated data

Slots

file

tree file

treetext

newick tree string

phylo

phylo object for tree structure

data

associated data

extraInfo

extra information, reserve for merge_tree

tip_seq

tip sequences

anc_seq

ancestral sequences

seq_type

sequence type, one of NT or AA

tipseq_file

tip sequence file

ancseq_file

ancestral sequence file

info

extra information, e.g. metadata, software version etc.

Author(s)

Guangchuang Yu https://guangchuangyu.github.io