pbmc_small_nested_interactions {tidyseurat}

Intercellular ligand-receptor interactions for 38 ligands from a single cell RNA-seq cluster.

Description

A dataset containing ligand-receptor interactions within a sample. There are 38 ligands from a single cell cluster versus 35 receptors in 6 other clusters.

Usage

data(pbmc_small_nested_interactions)

Format

A 'tibble' containing 100 rows and 9 columns. Cells are a subsample of the PBMC dataset of 2,700 single cells. Cell interactions were identified with 'SingleCellSignalR'.

sample

sample identifier

ligand

cluster and ligand identifier

receptor

cluster and receptor identifier

ligand.name

ligand name

receptor.name

receptor name

origin

cluster containing ligand

destination

cluster containing receptor

interaction.type

type of interation, paracrine or autocrine

LRscore

interaction score

Value

'tibble'

Source

https://satijalab.org/seurat/v3.1/pbmc3k_tutorial.html