processed_table {tempted}

Central-log-ratio (clr) transformed OTU table from the ECAM data

Description

Central-log-ratio (clr) transformed OTU table from the ECAM data

Usage

processed_table

Format

A data.frame with rows representing samples and matching with data.frame meta_table and columns representing microbial features (i.e. OTUs). Entries do not need to be transformed, and will be directly used by tempted. This data.frame is used to illustrate how tempted can be used for general form of multivariate longitudinal data already preprocessed by user.

References

Bokulich, Nicholas A., et al. "Antibiotics, birth mode, and diet shape microbiome maturation during early life." Science translational medicine 8.343 (2016): 343ra82-343ra82.