load_taxonomies {taxonbridge} | R Documentation |
Load and merge GBIF and NCBI taxonomic data
Description
Load and merge GBIF and NCBI taxonomic data
Usage
load_taxonomies(GBIF_path, NCBI_path)
Arguments
GBIF_path |
Path to the GBIF backbone taxonomy (compressed or uncompressed). |
NCBI_path |
Path to the NCBI taxonomy (compressed or uncompressed). |
Details
This method merges a GBIF Taxon.tsv
file (see download_gbif()
) and
a Taxonkit (https://bioinf.shenwei.me/taxonkit/download/) output file (see download_ncbi()
).
Value
A tibble containing merged GBIF and NCBI taxonomic data.
Examples
## Not run: load_taxonomies("path/to/GBIF/Taxon.tsv","path/to/NCBI-Taxonkit/All.lineages.tsv.gz")
## Not run: load_taxonomies(download_gbif(), download_ncbi(taxonkitpath = "/path/to/taxonkit"))
[Package taxonbridge version 1.2.2 Index]