taxa_at {taxizedb} | R Documentation |
Get taxa at specific scientific ranks
Description
Get taxa at specific scientific ranks
Usage
taxa_at(
x,
rank,
db = "ncbi",
missing = "lower",
verbose = TRUE,
warn = TRUE,
...
)
Arguments
x |
(character) Vector of taxon keys (ids) for the given database. required |
rank |
(character) A target rank for which to fetch data. required |
db |
(character) The database to search, one of ncbi, itis, gbif, col, or wfo |
missing |
(character) if no data found at the given rank and input key,
should we get the next closest lower than that given in |
verbose |
(logical) Print verbose messages |
warn |
(logical) If |
... |
Additional arguments passed to database specific classification functions |
Value
list of data.frame's for each input taxon key, where each data.frame has fields: name, rank, id. When no results found, an empty data.frame
Examples
## Not run:
taxa_at(186803, rank = "order", db="ncbi", missing = "lower")
taxa_at(c(186803, 541000, 216572, 186804, 31979, 186806),
rank = "family", missing = "lower")
taxa_at(c(154395, 154357, 23041, 154396), rank = "family", db="itis")
taxa_at(c('wfo-4000032377', 'wfo-0000541830'), rank = "family", db="wfo")
taxa_at("wfo-7000000057", rank = "order", db="wfo")
taxa_at(2877951, rank = "phylum", db="gbif")
taxa_at(c(2877951, 5386), rank = "family", db="gbif")
taxa_at(c(3960765, 3953606, 3953010), rank = "family", db="col")
## End(Not run)
[Package taxizedb version 0.3.1 Index]