tapnet2df {tapnet} | R Documentation |
Convert tapnet object into data.frame
Description
Function allows direct use of data prepared for tapnet analysis by other statistical methods, e.g. regression approaches
Usage
tapnet2df(tapnetObject)
Arguments
tapnetObject |
results of applying fit_tapnet to the tapnet object; |
Details
This function simply puts all data into a data.frame, with each row an entry in the network matrix.
Value
A data.frame containing network observations, PEMs, traits and abundances for regression-type analysis.
Author(s)
Carsten Dormann <carsten.dormann@biom.uni-freiburg.de>
References
Benadi et al. in prep
Examples
ex <- simulate_tapnet(nlower=10, nhigher=50, ntraits_pem=3, ntraits_nopem=2, Nwebs = 3)
df <- tapnet2df(ex)
head(df)
## Not run:
library(ranger)
frf <- ranger(interactions ~ ., data=df[, -c(1:2)], importance="impurity")
sort(importance(frf), decreasing=TRUE)
## End(Not run)
[Package tapnet version 0.3 Index]